Development, Regeneration, and Diseases of the Pancreas
The Parsons laboratory seeks to understand how the pancreas develops, regenerates following injury, and transitions to disease states such as diabetes and pancreatic cancer. Our research combines developmental biology, genetics, genomics, and chemical biology using the zebrafish as a vertebrate model system.
A major focus of the laboratory is understanding how insulin-producing β cells are generated, maintained, and restored following injury. To study β-cell loss and regeneration, my laboratory helped pioneer nitroreductase (NTR)-mediated targeted cell ablation in zebrafish. This technology enables precise cell elimination in living animals, allowing studies of tissue injury, regeneration, and disease progression. More recently, we developed improved NTR systems that reduce toxicity and support long-term studies of chronic disease, including persistent hyperglycemia.
A long-standing interest of the laboratory has been the role of pancreatic progenitor cells in regeneration. We previously identified centroacinar cells (CACs) as facultative progenitors capable of generating new β cells following injury. Current work seeks to define the molecular mechanisms regulating this regenerative response. Using single-cell transcriptomics, we are also investigating CAC heterogeneity and exploring how regenerative progenitors may contribute to pancreatic cancer initiation and progression.
A second focus of the laboratory examines developmental pathways that contribute to disease. Using genomic and genetic approaches, we have investigated the transcription factor SOX9, a key regulator of pancreatic development and pancreatic ductal adenocarcinoma (PDAC). Our work identified an unexpected role for SOX9 in ciliogenesis, linking a major regulator of pancreatic cancer to signaling pathways involved in development and disease.Looking forward, the laboratory is expanding into new areas that build upon our work in regeneration and diabetes. These include developing zebrafish reporters of endoplasmic reticulum (ER) stress, investigating neuronal regulation of β-cell biology, and examining how microbiome dysbiosis contributes to pancreatic inflammation through the gut-islet axis. Together, these studies seek to identify mechanisms regulating tissue repair, cellular stress responses, and disease progression while continuing the laboratory’s tradition of developing innovative tools for the zebrafish research community.
Beyond discovery research, the laboratory is committed to training the next generation of scientists. Through the UCI BioEYEs program, UCI graduate students gain experience in research, teaching, science communication, and community outreach while introducing middle school students to scientific discovery. These activities represent an important extension of the laboratory’s mission to advance both science and scientific literacy.
Recent Publications
- 2026 UCI BioEYEs: A Graduate-Student-Led Model for Sustainable, Inclusive Science Outreach. Parsons MJ, Bowman RL, Leon Parada KN, Bojorquez D, Lewis C, Del Padre B, Wiles TJ, Lee SW. Zebrafish. 2026 Aug 10:15458547261476961. doi.org/10.1177/15458547261476961. Epub ahead of print.
- 2026 The NTR/Prodrug Revolution: Tools for Controlling Cell Loss and Regeneration (Review) Kim GHJ and Parsons MJ. eLife doi.org/10.7554/eLife.110593.1
- 2026 A zebrafish module for genetic problem-solving. Parsons MJ and Lee SW. Journal of Microbiology & Biology Education doi.org/10.1128/jmbe.00051-26
- 2025 CD44 facilitates adhesive interactions in airineme-mediated intercellular signaling. Bowman RL, Kim J, Parsons MJ, and Eom DS. Frontiers in Cell and Developmental Biology. Front. Cell Dev. Biol., Volume 13: doi.org/10.3389/fcell.2025.1522710
- 2023 An inducible model of chronic hyperglycemia. Tucker TR, Knitter CA, Khoury DM, Eshghi S, Tran S, Sharrock AV, Wiles TJ, Ackerley DF, Mumm JS and Parsons MJ. Disease Models and Mechanisms, 16. 16(8): dmm050215. doi: 10.1242/dmm.050215.
- 2023 Generation and application of endogenously floxed alleles for cell-specific knockout in zebrafish. Shin M, Yin H, Shih Y, Nozak T, Portman D, Toles B, Kolb A, Luk K, Isogai S, Ishida K, Hanasaka T, Parsons MJ, Wolfe SA, Burns CE, Burns CG, Lawson ND. Developmental Cell. 58(22):2614-2626.e7. doi: 10.1016/j.devcel.2023.07.022
- 2021 SOX9 modulates cancer biomarker and cilia genes in pancreatic cancer. Edelman HE, McClymont SA, Tucker TR, Pineda S, Beer RL, McCallion AS, Parsons MJ. Hum Mol Genet. 30(6):485-499. doi:10.1093/hmg/ddab064
- 2020 Attenuating the EGFR-ERK-SOX9 axis promotes liver progenitor cell-mediated liver regeneration in zebrafish. So J, Kim M, Lee SH, Ko S, Lee DA, Park H, Azuma M, Parsons MJ, Prober D, Shin D. Hepatology. 2021 Apr;73(4):1494-1508. doi: 10.1002/hep.31437.PMID: 32602149
- 2017 Jagged directly induces liver and pancreas duct lineage in zebrafish. Zhang D, Gates K, Barske L, Wang G, Lancman J, Zeng X, Groff M, Wang K, Parsons MJ, Crump J and Dong, D. Nature Communications 8(1):769.
- 2016 Sox9b is a mediator of retinoic acid signaling restricting endocrine progenitor differentiation. Huang W, Beer RL, Delaspre F, Wang G, Edelman HE, Park H, Azuma M and Parsons MJ. Developmental Biology 418(1): 28-39.
- 2016 Centroacinar cells: At the center of pancreas regeneration (review). Beer RL, Parsons MJ and Rovira MC. Developmental Biology 413(1): 8-15. Front cover.
- 2015 Centroacinar cells are progenitors that contribute to endocrine pancreas regeneration. Delaspre F, Beer RL, Rovira M, Huang W, Wang G, Gee S, Vitery MC, Wheelan SJ, and Parsons MJ. Diabetes 64(10): 3499-3509.
- 2015 First quantitative high-throughput screen in a vertebrate model system: repurposing drugs for increased β-cell mass. Wang G, Rajpurohit SK, Delaspre F, Walker SL, White DT, Ceasrine A, Kuruvilla R, Li R, Shim JS, Liu JO, Parsons MJ,* Mumm JS.* eLife 4:e08261 *Joint work
- 2015 Fate mapping of ptf1a-expressing cells during pancreatic organogenesis and regeneration in zebrafish. Wang YJ, Park JT, Parsons MJ and Leach SD. Developmental Dynamics 244(6): 724-735.
- 2014 Differential in vivo tumorigenicity of diverse KRAS mutations in vertebrate pancreas: A comprehensive survey. Park JT, Johnson N, Liu S, Levesque M, Wang YJ, Ho H, Huso D, Maitra A, Parsons MJ, Prescott JD, Leach SD. Oncogene 34(21): 2801-2806.
- 2014 Retinoic acid plays an evolutionarily conserved and biphasic role in pancreas development. Huang W, Wang G, Delaspre F, Vitery MD, Beer RL, Parsons MJ. Developmental Biology 394(1): 83-93.
- 2014 Adoption of the Q transcriptional regulatory system for zebrafish transgenesis. Subedi A, Macurak M, Gee ST, Monge E, Goll MG, Potter CJ, Parsons MJ, Halpern ME. Methods 66(3): 433-440.
- 2013 Aldh1-expressing endocrine progenitor cells regulate secondary islet formation in larval zebrafish pancreas. Matsuda H, Parsons MJ, Leach SD. PLoS One. 17; 8(9):e74350. doi: 10.1371/journal.pone.0074350.
- 2012 Zebrafish sox9b is crucial for hepatopancreatic duct development and pancreatic endocrine cell regeneration. Manfroid I, Ghaye A, Naye F, Detry N, Palm S, Pan L, Ma TP, Huang W, Rovira M, Martial JA, Parsons MJ, Moens CB, Voz ML and Peers B. Developmental Biology 366(2): 268-278.
- 2012 Automated Reporter Quantification in vivo: High-throughput Screening Method for Reporter-based Assays in Zebrafish. Walker SL, Ariga J, Mathias JR, Coothankandaswamy V, Xie X, Distel M, Köster RW, Parsons MJ, Bhalla KN, Saxena MT, and Mumm JS. PLoS One 7:e29916.
- 2011 Chemical screen identifies FDA approved drugs and target pathways that induce precocious β-cell differentiation. Rovira M, Huang W, Yusuff S, Shim JS, Ferrante AA, Liu JO and Parsons MJ. Proc Natl. Acad Sci USA 108 (48):19264-9.
- 2011 Genetic inducible fate mapping in larval zebrafish reveals origins of adult insulin producing β-cells. Wang Y, Rovira M, Yusuff S, Huang W and Parsons MJ. Development 138 (4): 609-617.
- 2009 Notch-responsive progenitors initiate the secondary transition in larval zebrafish pancreas. Parsons MJ, Pisharath H, Yusuff S, Moore JC, Siekmann AF, Lawson N, and Leach SD. Mechanisms of Development 126(10): 898-912.
- 2009 Regeneration of the Pancreas in Adult Zebrafish. Moss JB, Koustubhan P, Greenman M, Parsons MJ, Walter I, Moss LG. Diabetes 58 (8): 1844-1851.
- 2009 Nitroreductase-mediated cell ablation in transgenic zebrafish embryos. Pisharath H, Parsons MJ. Book chapter in Zebrafish: Methods and Protocols (Methods in Molecular Biology) 546: 133-143.
- 2007 Targeted ablation of beta cells in the embryonic zebrafish pancreas using E.coli nitroreductase. Pisharath H, Rhee J, Swanson M, Leach SD and Parsons MJ. Mechanisms of Development 124(3): 218-227.

